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Bump the python group across 1 directory with 6 updates#198

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Bump the python group across 1 directory with 6 updates#198
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dependabot/pip/python-bc5cc959b6

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Bumps the python group with 6 updates in the / directory:

Package From To
dask-image 2025.11.0 2026.5.0
matplotlib 3.10.8 3.10.9
pydata-sphinx-theme 0.17.0 0.18.0
sphinx 9.0.4 9.1.0
sphinx-gallery 0.20.0 0.21.0
tifffile 2026.4.11 2026.6.1

Updates dask-image from 2025.11.0 to 2026.5.0

Release notes

Sourced from dask-image's releases.

v2026.5.0

v2026.05.0 (2026-05-26)

We're pleased to announce the release of dask-image v2026.05.0!

Highlights

Highlights of this release include making the dask dataframe dependency optional, improving packaging and compatibility with Numpy v2.4.

Bug Fixes

  • Compatibility with Numpy v2.4 (#425)
  • Fix package discovery in pyproject.toml (#422)
  • Bump tifffile to ensure functionality used in imread tests (#424)

API Changes

  • Make dataframe dependencies optional (#429)

Other Pull Requests

  • Bump actions/checkout from 5 to 6 (#420)
  • Bump coverallsapp/github-action from 2.3.6 to 2.3.7 (#421)
  • Bump conda-incubator/setup-miniconda from 3 to 4 (#430)
  • Bump actions/checkout from 5 to 6 (#433)

5 authors added to this release (alphabetical)

2 reviewers added to this release (alphabetical)

v2026.5.0rc1

v2026.5.0 (2026-05-26)

(Edit: Note that the associated tag is v2026.05.0rc1, but correct semantic versioning is v2026.5.0rc1)

We're pleased to announce the release of dask-image v2026.05.0!

... (truncated)

Changelog

Sourced from dask-image's changelog.

======= History

v2026.05.0 (2026-05-26)

We're pleased to announce the release of dask-image v2026.05.0!

Highlights

Highlights of this release include making the dask dataframe dependency optional, improving packaging and compatibility with Numpy v2.4.

Bug Fixes

  • Compatibility with Numpy v2.4 (#425)
  • Fix package discovery in pyproject.toml (#422)
  • Bump tifffile to ensure functionality used in imread tests (#424)

API Changes

  • Make dataframe dependencies optional (#429)

Other Pull Requests

  • Bump actions/checkout from 5 to 6 (#420)
  • Bump coverallsapp/github-action from 2.3.6 to 2.3.7 (#421)
  • Bump conda-incubator/setup-miniconda from 3 to 4 (#430)
  • Bump actions/checkout from 5 to 6 (#433)

5 authors added to this release (alphabetical)

  • Antonio Valentino <https://github.com/dask/dask-image/commits?author=avalentino>_ - @​avalentino
  • dependabot[bot] <https://github.com/dask/dask-image/commits?author=dependabot[bot]>_ - @​dependabot[bot]
  • Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>_ - @​GenevieveBuckley
  • Marvin Albert <https://github.com/dask/dask-image/commits?author=m-albert>_ - @​m-albert
  • Thomas Robitaille <https://github.com/dask/dask-image/commits?author=astrofrog>_ - @​astrofrog

2 reviewers added to this release (alphabetical)

  • Copilot <https://github.com/dask/dask-image/commits?author=Copilot>_ - @​Copilot
  • Genevieve Buckley <https://github.com/dask/dask-image/commits?author=GenevieveBuckley>_ - @​GenevieveBuckley
Commits
  • 6a7c19c Update HISTORY.rst for release v2026.05.0 (#434)
  • 65f0fa9 Bump actions/checkout from 5 to 6 (#433)
  • f0ee7ae Make dataframe dependencies optional (#429)
  • 7cdc53f Bump actions/checkout from 5 to 6 (#420)
  • f3b6cc8 Bump conda-incubator/setup-miniconda from 3 to 4 (#430)
  • a513d9c Compatibility with Numpy v2, swap deprecated numpy.in1d to numpy.isin (#425)
  • 13b6e67 Bump tifffile to first version in which TiffWriter has method write (#424)
  • aeeb99f Fix package discovery in pyproject.toml (#422)
  • bbd8f5f Bump coverallsapp/github-action from 2.3.6 to 2.3.7 (#421)
  • See full diff in compare view

Updates matplotlib from 3.10.8 to 3.10.9

Release notes

Sourced from matplotlib's releases.

v3.10.9

This is a micro release of the v3.10.x series. Highlights of this release include:

  • Various minor bug and doc fixes
  • Security hardening validation of cyclers - Removing eval usage
  • Security hardening in Latex and PS calls - Removing shell escapes
Commits
  • dd8d78b REL: v3.10.9
  • 2fb1891 REL: Release prep v3.10.9
  • d0e923a Merge branch 'v3.10.8-doc' into v3.10.x
  • 1637932 Merge pull request #31558 from meeseeksmachine/auto-backport-of-pr-31556-on-v...
  • a83faac Backport PR #31556: FIX: Inverted PyErr_Occurred check in enum type caster (_...
  • a4f57ab Merge pull request #31545 from ksunden/backport-of-pr-31282-on-v3.10.x
  • 063288d Merge pull request #31544 from ksunden/backport-of-pr-31248-on-v3.10.x
  • b2ed196 Backport PR #31248: SEC: Remove eval() from validate_cycler
  • acc6024 Merge pull request #31282 from scottshambaugh/tex_no_shell
  • e3fb541 Merge pull request #31078 from meeseeksmachine/auto-backport-of-pr-31075-on-v...
  • Additional commits viewable in compare view

Updates pydata-sphinx-theme from 0.17.0 to 0.18.0

Release notes

Sourced from pydata-sphinx-theme's releases.

v0.18.0

Breaking

Improvements

Bugs

Dependencies

New Contributors

Full Changelog: pydata/pydata-sphinx-theme@v0.17.1...v0.18.0

v0.18.0rc2

What's Changed


... (truncated)

Commits

Updates sphinx from 9.0.4 to 9.1.0

Release notes

Sourced from sphinx's releases.

Sphinx 9.1.0

Changelog: https://www.sphinx-doc.org/en/master/changes.html

Dependencies

  • #14153: Drop Python 3.11 support.
  • #12555: Drop Docutils 0.20 support. Patch by Adam Turner

Features added

  • Add add_static_dir() for copying static assets from extensions to the build output. Patch by Jared Dillard

Bugs fixed

  • #14189: autodoc: Fix duplicate :no-index-entry: for modules. Patch by Adam Turner
  • #13713: Fix compatibility with MyST-Parser. Patch by Adam Turner
  • Fix tests for Python 3.15. Patch by Adam Turner
  • #14089: autodoc: Fix default option parsing. Patch by Adam Turner
  • Remove incorrect static typing assertions. Patch by Adam Turner
  • #14050: LaTeXTranslator fails to build documents using the "acronym" standard role. Patch by Günter Milde
  • LaTeX: Fix rendering for grid filled merged vertical cell. Patch by Tim Nordell
  • #14228: LaTeX: Fix overrun footer for cases of merged vertical table cells. Patch by Tim Nordell
  • #14207: Fix creating HTMLThemeFactory objects in third-party extensions. Patch by Adam Turner
  • #3099: LaTeX: PDF build crashes if a code-block contains more than circa 1350 codelines (about 27 a4-sized pages at default pointsize). Patch by Jean-François B.
  • #14064: LaTeX: TABs ending up in sphinxVerbatim fail to obey tab stops. Patch by Jean-François B.
  • #14089: autodoc: Improve support for non-weakreferencable objects. Patch by Adam Turner
  • LaTeX: Fix accidental removal at 3.5.0 (#8854) of the documentation of literalblockcappos key of sphinxsetup. Patch by Jean-François B.

... (truncated)

Changelog

Sourced from sphinx's changelog.

Release 9.1.0 (released Dec 31, 2025)

Dependencies

  • #14153: Drop Python 3.11 support.
  • #12555: Drop Docutils 0.20 support. Patch by Adam Turner

Features added

  • Add :meth:~sphinx.application.Sphinx.add_static_dir for copying static assets from extensions to the build output. Patch by Jared Dillard

Bugs fixed

  • #14189: autodoc: Fix duplicate :no-index-entry: for modules. Patch by Adam Turner
  • #13713: Fix compatibility with MyST-Parser. Patch by Adam Turner
  • Fix tests for Python 3.15. Patch by Adam Turner
  • #14089: autodoc: Fix default option parsing. Patch by Adam Turner
  • Remove incorrect static typing assertions. Patch by Adam Turner
  • #14050: LaTeXTranslator fails to build documents using the "acronym" standard role. Patch by Günter Milde
  • LaTeX: Fix rendering for grid filled merged vertical cell. Patch by Tim Nordell
  • #14228: LaTeX: Fix overrun footer for cases of merged vertical table cells. Patch by Tim Nordell
  • #14207: Fix creating HTMLThemeFactory objects in third-party extensions. Patch by Adam Turner
  • #3099: LaTeX: PDF build crashes if a code-block contains more than circa 1350 codelines (about 27 a4-sized pages at default pointsize). Patch by Jean-François B.
  • #14064: LaTeX: TABs ending up in sphinxVerbatim fail to obey tab stops. Patch by Jean-François B.
  • #14089: autodoc: Improve support for non-weakreferencable objects. Patch by Adam Turner
  • LaTeX: Fix accidental removal at 3.5.0 (#8854) of the documentation of literalblockcappos key of :ref:'sphinxsetup' <latexsphinxsetup>. Patch by Jean-François B.
Commits
  • cc7c6f4 Bump to 9.1.0 final
  • b127b94 Add app.add_static_dir() for copying extension static files (#14219)
  • 20f1c46 LaTeX: Inhibit breaks for rows with merged vertical cells (#14227)
  • 3c85411 Polish CHANGES.rst (#14225)
  • 9ee5446 LaTeX: restore 1.7 documentation of literalblockcappos (#14224)
  • d75d602 LaTeX: improve (again...) some code comments in time for 9.1.0 (#14222)
  • 8dca61d Improve some LaTeX code comments (#14220)
  • 8ab9600 Bump to 9.1.0 candidate 2
  • d59b237 autodoc: Improve support for non-weakreferencable objects
  • 964424b Use the correct reference for using existing extensions (#14157)
  • Additional commits viewable in compare view

Updates sphinx-gallery from 0.20.0 to 0.21.0

Release notes

Sourced from sphinx-gallery's releases.

Release v0.21.0

Full Changelog

Support for Sphinx 5 dropped in this release. Requirement is now Sphinx >= 6.

Implemented enhancements:

  • Add support for dynamic filtering by tag #1555 (Cadair)

Fixed bugs:

  • Fix subsection header sanitization when nested_sections=False #1550 (lucyleeow)
  • Fix generate_gallery_rst when nested_sections=False user provides own index.rst #1549 (lucyleeow)

Documentation

Project maintenance

... (truncated)

Changelog

Sourced from sphinx-gallery's changelog.

v0.21.0

Support for Sphinx 5 dropped in this release. Requirement is now Sphinx >= 6.

Implemented enhancements:

  • Add support for dynamic filtering by tag [#1555](https://github.com/sphinx-gallery/sphinx-gallery/issues/1555) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1555>__ (Cadair <https://github.com/Cadair>__)

Fixed bugs:

  • Fix subsection header sanitization when nested_sections=False [#1550](https://github.com/sphinx-gallery/sphinx-gallery/issues/1550) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1550>__ (lucyleeow <https://github.com/lucyleeow>__)
  • Fix generate_gallery_rst when nested_sections=False user provides own index.rst [#1549](https://github.com/sphinx-gallery/sphinx-gallery/issues/1549) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1549>__ (lucyleeow <https://github.com/lucyleeow>__)

Documentation

  • DOC Add v0.20.0 to CHANGES.rst [#1567](https://github.com/sphinx-gallery/sphinx-gallery/issues/1567) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1567>__ (lucyleeow <https://github.com/lucyleeow>__)
  • DOC Note sphinx bump in changes [#1560](https://github.com/sphinx-gallery/sphinx-gallery/issues/1560) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1560>__ (lucyleeow <https://github.com/lucyleeow>__)
  • DOC Fix typos in nested_sections docs [#1547](https://github.com/sphinx-gallery/sphinx-gallery/issues/1547) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1547>__ (lucyleeow <https://github.com/lucyleeow>__)
  • Small typo on the configuration page of documentation [#1537](https://github.com/sphinx-gallery/sphinx-gallery/issues/1537) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1537>__ (floffy-f <https://github.com/floffy-f>__)
  • Update the list of projects [#1532](https://github.com/sphinx-gallery/sphinx-gallery/issues/1532) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1532>__ (timhoffm <https://github.com/timhoffm>__)

Project maintenance

  • [pre-commit.ci] pre-commit autoupdate [#1602](https://github.com/sphinx-gallery/sphinx-gallery/issues/1602) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1602>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • TST: Use tmp_path fixture instead of tempfile [#1601](https://github.com/sphinx-gallery/sphinx-gallery/issues/1601) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1601>__ (QuLogic <https://github.com/QuLogic>__)
  • Re-enable Sphinx dev CI [#1599](https://github.com/sphinx-gallery/sphinx-gallery/issues/1599) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1599>__ (lucyleeow <https://github.com/lucyleeow>__)
  • ENH: Accept Paths in split_code_and_text_blocks [#1598](https://github.com/sphinx-gallery/sphinx-gallery/issues/1598) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1598>__ (QuLogic <https://github.com/QuLogic>__)
  • TYP: Fix typing for back references [#1597](https://github.com/sphinx-gallery/sphinx-gallery/issues/1597) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1597>__ (QuLogic <https://github.com/QuLogic>__)
  • [pre-commit.ci] pre-commit autoupdate [#1596](https://github.com/sphinx-gallery/sphinx-gallery/issues/1596) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1596>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • TST Amend add_rst to add_file and make flexible [#1595](https://github.com/sphinx-gallery/sphinx-gallery/issues/1595) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1595>__ (lucyleeow <https://github.com/lucyleeow>__)
  • Switch from codecs.open to plain open [#1594](https://github.com/sphinx-gallery/sphinx-gallery/issues/1594) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1594>__ (QuLogic <https://github.com/QuLogic>__)
  • TST: Prefer Path over os.path in all test code [#1593](https://github.com/sphinx-gallery/sphinx-gallery/issues/1593) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1593>__ (QuLogic <https://github.com/QuLogic>__)
  • TST: Switch from tmpdir to tmp_path [#1592](https://github.com/sphinx-gallery/sphinx-gallery/issues/1592) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1592>__ (QuLogic <https://github.com/QuLogic>__)
  • Remove unused imports [#1591](https://github.com/sphinx-gallery/sphinx-gallery/issues/1591) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1591>__ (QuLogic <https://github.com/QuLogic>__)
  • [pre-commit.ci] pre-commit autoupdate [#1590](https://github.com/sphinx-gallery/sphinx-gallery/issues/1590) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1590>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • [pre-commit.ci] pre-commit autoupdate [#1589](https://github.com/sphinx-gallery/sphinx-gallery/issues/1589) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1589>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • Bump the actions group with 2 updates [#1588](https://github.com/sphinx-gallery/sphinx-gallery/issues/1588) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1588>__ (dependabot[bot] <https://github.com/apps/dependabot>__)
  • [pre-commit.ci] pre-commit autoupdate [#1586](https://github.com/sphinx-gallery/sphinx-gallery/issues/1586) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1586>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • [pre-commit.ci] pre-commit autoupdate [#1585](https://github.com/sphinx-gallery/sphinx-gallery/issues/1585) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1585>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • chore(projects): add the atomistic cookbook [#1584](https://github.com/sphinx-gallery/sphinx-gallery/issues/1584) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1584>__ (HaoZeke <https://github.com/HaoZeke>__)
  • [pre-commit.ci] pre-commit autoupdate [#1583](https://github.com/sphinx-gallery/sphinx-gallery/issues/1583) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1583>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • [pre-commit.ci] pre-commit autoupdate [#1582](https://github.com/sphinx-gallery/sphinx-gallery/issues/1582) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1582>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)
  • Bump the actions group with 2 updates [#1581](https://github.com/sphinx-gallery/sphinx-gallery/issues/1581) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1581>__ (dependabot[bot] <https://github.com/apps/dependabot>__)
  • MNT: Extract test-related functionality from utils into _testing [#1580](https://github.com/sphinx-gallery/sphinx-gallery/issues/1580) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1580>__ (timhoffm <https://github.com/timhoffm>__)
  • MAINT: Autolabel fix (maybe) [#1579](https://github.com/sphinx-gallery/sphinx-gallery/issues/1579) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1579>__ (larsoner <https://github.com/larsoner>__)
  • MNT: Extract character length calculation from _format_for_writing [#1578](https://github.com/sphinx-gallery/sphinx-gallery/issues/1578) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1578>__ (timhoffm <https://github.com/timhoffm>__)
  • MNT: Refactor costs to an explicit data class ExampleCost [#1577](https://github.com/sphinx-gallery/sphinx-gallery/issues/1577) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1577>__ (timhoffm <https://github.com/timhoffm>__)
  • MNT: Add type annotations to gen_gallery.py [#1575](https://github.com/sphinx-gallery/sphinx-gallery/issues/1575) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1575>__ (timhoffm <https://github.com/timhoffm>__)
  • [pre-commit.ci] pre-commit autoupdate [#1574](https://github.com/sphinx-gallery/sphinx-gallery/issues/1574) <https://github.com/sphinx-gallery/sphinx-gallery/pull/1574>__ (pre-commit-ci[bot] <https://github.com/apps/pre-commit-ci>__)

... (truncated)

Commits

Updates tifffile from 2026.4.11 to 2026.6.1

Release notes

Sourced from tifffile's releases.

v2026.6.1

Read and write TIFF files

Tifffile is a comprehensive Python library to

  1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
  2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, CCITT, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

  • Replace NullContext with contextlib.nullcontext (breaking).
  • Fix writing monochrome linear_raw (#328).
  • Fix keyboard axis selection in imshow interactive viewer (#327).
  • Fix reading short ASCII string tag values from NDPI.
  • Add option to suppress writing extrasamples tag.
  • Verify origin of codecs.

v2026.5.15

Read and write TIFF files

Tifffile is a comprehensive Python library to

  1. store NumPy arrays in TIFF (Tagged Image File Format) files, and
  2. read image and metadata from TIFF-like files used in bioimaging.

Image and metadata can be read from TIFF, BigTIFF, OME-TIFF, GeoTIFF, Adobe DNG, ZIF (Zoomable Image File Format), MetaMorph STK, Zeiss LSM, ImageJ hyperstack, Micro-Manager MMStack and NDTiff, SGI, NIHImage, Olympus FluoView and SIS, ScanImage, Molecular Dynamics GEL, Aperio SVS, Leica SCN, Roche BIF, PerkinElmer QPTIFF (QPI, PKI), Hamamatsu NDPI, Argos AVS, Philips DP, and ThermoFisher EER formatted files.

Image data can be read as NumPy arrays or Zarr arrays/groups from strips, tiles, pages (IFDs), SubIFDs, higher order series, and pyramidal levels.

Image data can be written to TIFF, BigTIFF, OME-TIFF, and ImageJ hyperstack compatible files in multi-page, volumetric, pyramidal, memory-mappable, tiled, predicted, or compressed form.

Many compression and predictor schemes are supported via the imagecodecs library, including LZW, PackBits, Deflate, CCITT, PIXTIFF, LZMA, LERC, Zstd, JPEG (8 and 12-bit, lossless), JPEG 2000, JPEG XR, JPEG XL, WebP, PNG, EER, Jetraw, 24-bit floating-point, and horizontal differencing.

Tifffile can also be used to inspect TIFF structures, read image data from multi-dimensional file sequences, write fsspec ReferenceFileSystem for TIFF files and image file sequences, patch TIFF tag values, and parse many proprietary metadata formats.

Changes

  • Update ZarrFileSequenceStore to zarr format 3 (breaking).
  • Derive ZarrFileSequenceStore dimension names from FileSequence.dims.
  • Add option to override dimension names in zarr stores.

... (truncated)

Changelog

Sourced from tifffile's changelog.

2026.6.1

  • Replace NullContext with contextlib.nullcontext (breaking).
  • Fix writing monochrome linear_raw (#328).
  • Fix keyboard axis selection in imshow interactive viewer (#327).
  • Fix reading short ASCII string tag values from NDPI.
  • Add option to suppress writing extrasamples tag.
  • Verify origin of codecs.

2026.5.15

  • Update ZarrFileSequenceStore to zarr format 3 (breaking).
  • Derive ZarrFileSequenceStore dimension names from FileSequence.dims.
  • Add option to override dimension names in zarr stores.
  • Add support for Python 3.15.

2026.5.2

  • Change TiffFile.series from list to callable TiffSeries sequence (breaking).
  • Remove TiffPageSeries squeeze dual-state (breaking).
  • Remove TiffPageSeries.get_shape, get_axes, and get_coords (breaking).
  • Remove ZarrTiffStore squeeze parameter (breaking).
  • Update ZarrTiffStore to zarr format 3 and multiscales to NGFF 0.5 (breaking).
  • Update multiscales zarr format 2 fsspec files to NGFF 0.4 (breaking).
  • Remove generic TiffPage coords (breaking).
  • Change dims and sizes to use single-char axis codes (breaking).
  • Add zarr format 3 compatible Tiff codec.
  • Add asxarray methods to TiffFile, TiffPage, TiffPageSeries (requires xarray).
  • Add geotiff kind of TiffPageSeries.
  • Add mpp and coord_offsets/scales/units properties to TiffPageSeries.
  • Add attrs property to TiffPage and TiffPageSeries.
  • Add kind and squeeze parameters to memmap.
  • Add kind parameter to imwrite and TiffFile; deprecate ome, imagej, shaped.
  • Add return_as parameter to imread; deprecate aszarr.
  • Fix writing TIFF trees (#326).
  • Fix wrong TiffTagRegistry entries (#323).
  • Implement TiffPageSeries.coords property.
  • Deprecate kwargs to FileSequence.asarray; use imreadargs.
  • Require zarr>=3.2.0 for zarr support.
  • Drop support for numpy 2.0 (SPEC0, #324).
Commits

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Bumps the python group with 6 updates in the / directory:

| Package | From | To |
| --- | --- | --- |
| [dask-image](https://github.com/dask/dask-image) | `2025.11.0` | `2026.5.0` |
| [matplotlib](https://github.com/matplotlib/matplotlib) | `3.10.8` | `3.10.9` |
| [pydata-sphinx-theme](https://github.com/pydata/pydata-sphinx-theme) | `0.17.0` | `0.18.0` |
| [sphinx](https://github.com/sphinx-doc/sphinx) | `9.0.4` | `9.1.0` |
| [sphinx-gallery](https://github.com/sphinx-gallery/sphinx-gallery) | `0.20.0` | `0.21.0` |
| [tifffile](https://github.com/cgohlke/tifffile) | `2026.4.11` | `2026.6.1` |



Updates `dask-image` from 2025.11.0 to 2026.5.0
- [Release notes](https://github.com/dask/dask-image/releases)
- [Changelog](https://github.com/dask/dask-image/blob/main/HISTORY.rst)
- [Commits](dask/dask-image@v2025.11.0...v2026.5.0)

Updates `matplotlib` from 3.10.8 to 3.10.9
- [Release notes](https://github.com/matplotlib/matplotlib/releases)
- [Commits](matplotlib/matplotlib@v3.10.8...v3.10.9)

Updates `pydata-sphinx-theme` from 0.17.0 to 0.18.0
- [Release notes](https://github.com/pydata/pydata-sphinx-theme/releases)
- [Changelog](https://github.com/pydata/pydata-sphinx-theme/blob/main/RELEASE.md)
- [Commits](pydata/pydata-sphinx-theme@v0.17.0...v0.18.0)

Updates `sphinx` from 9.0.4 to 9.1.0
- [Release notes](https://github.com/sphinx-doc/sphinx/releases)
- [Changelog](https://github.com/sphinx-doc/sphinx/blob/master/CHANGES.rst)
- [Commits](sphinx-doc/sphinx@v9.0.4...v9.1.0)

Updates `sphinx-gallery` from 0.20.0 to 0.21.0
- [Release notes](https://github.com/sphinx-gallery/sphinx-gallery/releases)
- [Changelog](https://github.com/sphinx-gallery/sphinx-gallery/blob/master/CHANGES.rst)
- [Commits](sphinx-gallery/sphinx-gallery@v0.20.0...v0.21.0)

Updates `tifffile` from 2026.4.11 to 2026.6.1
- [Release notes](https://github.com/cgohlke/tifffile/releases)
- [Changelog](https://github.com/cgohlke/tifffile/blob/master/CHANGES.rst)
- [Commits](cgohlke/tifffile@v2026.4.11...v2026.6.1)

---
updated-dependencies:
- dependency-name: dask-image
  dependency-version: 2026.5.0
  dependency-type: direct:development
  update-type: version-update:semver-major
  dependency-group: python
- dependency-name: matplotlib
  dependency-version: 3.10.9
  dependency-type: direct:development
  update-type: version-update:semver-patch
  dependency-group: python
- dependency-name: pydata-sphinx-theme
  dependency-version: 0.18.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: sphinx
  dependency-version: 9.1.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: sphinx-gallery
  dependency-version: 0.21.0
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
- dependency-name: tifffile
  dependency-version: 2026.6.1
  dependency-type: direct:development
  update-type: version-update:semver-minor
  dependency-group: python
...

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@dependabot dependabot Bot added dependencies Pull requests that update a dependency file python Pull requests that update Python code labels Jun 3, 2026
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